Characterization of three mnp genes of Fomitiporia mediterranea and report of additional class II peroxidases in the order hymenochaetales.
Identifieur interne : 000579 ( Main/Exploration ); précédent : 000578; suivant : 000580Characterization of three mnp genes of Fomitiporia mediterranea and report of additional class II peroxidases in the order hymenochaetales.
Auteurs : Ingo Morgenstern [États-Unis] ; Deborah L. Robertson ; David S. HibbettSource :
- Applied and environmental microbiology [ 1098-5336 ] ; 2010.
Descripteurs français
- KwdFr :
- ADN fongique (composition chimique), ADN fongique (génétique), Amorces ADN (génétique), Analyse de profil d'expression de gènes (MeSH), Analyse de regroupements (MeSH), Analyse de séquence d'ADN (MeSH), Basidiomycota (enzymologie), Basidiomycota (génétique), Cadres ouverts de lecture (MeSH), Introns (MeSH), Lignine (métabolisme), Peroxidases (biosynthèse), Peroxidases (génétique), Phylogenèse (MeSH), Protéines fongiques (biosynthèse), Protéines fongiques (génétique), RT-PCR (méthodes), Régulation de l'expression des gènes fongiques (MeSH), Similitude de séquences d'acides aminés (MeSH).
- MESH :
- biosynthèse : Peroxidases, Protéines fongiques.
- composition chimique : ADN fongique.
- enzymologie : Basidiomycota.
- génétique : ADN fongique, Amorces ADN, Basidiomycota, Peroxidases, Protéines fongiques.
- métabolisme : Lignine.
- méthodes : RT-PCR.
- Analyse de profil d'expression de gènes, Analyse de regroupements, Analyse de séquence d'ADN, Cadres ouverts de lecture, Introns, Phylogenèse, Régulation de l'expression des gènes fongiques, Similitude de séquences d'acides aminés.
English descriptors
- KwdEn :
- Basidiomycota (enzymology), Basidiomycota (genetics), Cluster Analysis (MeSH), DNA Primers (genetics), DNA, Fungal (chemistry), DNA, Fungal (genetics), Fungal Proteins (biosynthesis), Fungal Proteins (genetics), Gene Expression Profiling (MeSH), Gene Expression Regulation, Fungal (MeSH), Introns (MeSH), Lignin (metabolism), Open Reading Frames (MeSH), Peroxidases (biosynthesis), Peroxidases (genetics), Phylogeny (MeSH), Reverse Transcriptase Polymerase Chain Reaction (methods), Sequence Analysis, DNA (MeSH), Sequence Homology, Amino Acid (MeSH).
- MESH :
- chemical , biosynthesis : Fungal Proteins, Peroxidases.
- chemical , chemistry : DNA, Fungal.
- chemical , genetics : DNA Primers, DNA, Fungal, Fungal Proteins, Peroxidases.
- enzymology : Basidiomycota.
- genetics : Basidiomycota.
- chemical , metabolism : Lignin.
- methods : Reverse Transcriptase Polymerase Chain Reaction.
- Cluster Analysis, Gene Expression Profiling, Gene Expression Regulation, Fungal, Introns, Open Reading Frames, Phylogeny, Sequence Analysis, DNA, Sequence Homology, Amino Acid.
Abstract
We report the sequence-based characterization and expression patterns of three manganese peroxidase genes from the white rot fungus and grape vine pathogen Fomitiporia mediterranea (Agaricomycotina, Hymenochaetales), termed Fmmnp1, Fmmnp2, and Fmmnp3. The predicted open reading frames (ORFs) are 1,516-, 1,351-, and 1,345-bp long and are interrupted by seven, four, and four introns, respectively. The deduced amino acid sequences encode manganese peroxidases (EC 1.11.1.13) containing 371, 369, and 371 residues, respectively, and are similar to the manganese peroxidases of the model white rot organism Phanerochaete chrysosporium. The expression of the genes is most likely differentially regulated, as revealed by real-time PCR analysis. Phylogenetic analysis reveals that other members of the order Hymenochaetales harbor mnp genes encoding proteins that are related only distantly to those of F. mediterranea. Furthermore, multiple partial lip- and mnp-like sequences obtained for Pycnoporus cinnabarinus (Agaricomycotina, Polyporales) suggest that lignin degradation by white rot taxa relies heavily on ligninolytic peroxidases and is not efficiently achieved by laccases only.
DOI: 10.1128/AEM.00547-10
PubMed: 20675443
PubMed Central: PMC2950472
Affiliations:
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The predicted open reading frames (ORFs) are 1,516-, 1,351-, and 1,345-bp long and are interrupted by seven, four, and four introns, respectively. The deduced amino acid sequences encode manganese peroxidases (EC 1.11.1.13) containing 371, 369, and 371 residues, respectively, and are similar to the manganese peroxidases of the model white rot organism Phanerochaete chrysosporium. The expression of the genes is most likely differentially regulated, as revealed by real-time PCR analysis. Phylogenetic analysis reveals that other members of the order Hymenochaetales harbor mnp genes encoding proteins that are related only distantly to those of F. mediterranea. Furthermore, multiple partial lip- and mnp-like sequences obtained for Pycnoporus cinnabarinus (Agaricomycotina, Polyporales) suggest that lignin degradation by white rot taxa relies heavily on ligninolytic peroxidases and is not efficiently achieved by laccases only.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20675443</PMID><DateCompleted><Year>2011</Year><Month>01</Month><Day>06</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1098-5336</ISSN><JournalIssue CitedMedium="Internet"><Volume>76</Volume><Issue>19</Issue><PubDate><Year>2010</Year><Month>Oct</Month></PubDate></JournalIssue><Title>Applied and environmental microbiology</Title><ISOAbbreviation>Appl Environ Microbiol</ISOAbbreviation></Journal><ArticleTitle>Characterization of three mnp genes of Fomitiporia mediterranea and report of additional class II peroxidases in the order hymenochaetales.</ArticleTitle><Pagination><MedlinePgn>6431-40</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1128/AEM.00547-10</ELocationID><Abstract><AbstractText>We report the sequence-based characterization and expression patterns of three manganese peroxidase genes from the white rot fungus and grape vine pathogen Fomitiporia mediterranea (Agaricomycotina, Hymenochaetales), termed Fmmnp1, Fmmnp2, and Fmmnp3. The predicted open reading frames (ORFs) are 1,516-, 1,351-, and 1,345-bp long and are interrupted by seven, four, and four introns, respectively. The deduced amino acid sequences encode manganese peroxidases (EC 1.11.1.13) containing 371, 369, and 371 residues, respectively, and are similar to the manganese peroxidases of the model white rot organism Phanerochaete chrysosporium. The expression of the genes is most likely differentially regulated, as revealed by real-time PCR analysis. Phylogenetic analysis reveals that other members of the order Hymenochaetales harbor mnp genes encoding proteins that are related only distantly to those of F. mediterranea. Furthermore, multiple partial lip- and mnp-like sequences obtained for Pycnoporus cinnabarinus (Agaricomycotina, Polyporales) suggest that lignin degradation by white rot taxa relies heavily on ligninolytic peroxidases and is not efficiently achieved by laccases only.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Morgenstern</LastName><ForeName>Ingo</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Clark University, Department of Biology, Worcester, Massachusetts 01610, USA. imorgenstern@gene.concordia.ca.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Robertson</LastName><ForeName>Deborah L</ForeName><Initials>DL</Initials></Author><Author ValidYN="Y"><LastName>Hibbett</LastName><ForeName>David S</ForeName><Initials>DS</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, 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Hibbett</name><name sortKey="Robertson, Deborah L" sort="Robertson, Deborah L" uniqKey="Robertson D" first="Deborah L" last="Robertson">Deborah L. Robertson</name></noCountry><country name="États-Unis"><noRegion><name sortKey="Morgenstern, Ingo" sort="Morgenstern, Ingo" uniqKey="Morgenstern I" first="Ingo" last="Morgenstern">Ingo Morgenstern</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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